Index _ | A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | V _ __init__() (py21cmmc.core.Core21cmEMU method) (py21cmmc.core.CoreBase method) (py21cmmc.core.CoreCMB method) (py21cmmc.core.CoreCoevalModule method) (py21cmmc.core.CoreForest method) (py21cmmc.core.CoreLightConeModule method) (py21cmmc.core.CoreLuminosityFunction method) (py21cmmc.core.ModuleBase method) (py21cmmc.cosmoHammer.CosmoHammerSampler method) (py21cmmc.cosmoHammer.HDFStorage method) (py21cmmc.cosmoHammer.HDFStorageUtil method) (py21cmmc.cosmoHammer.LikelihoodComputationChain method) (py21cmmc.cosmoHammer.Params method) (py21cmmc.likelihood.Likelihood1DPowerCoeval method) (py21cmmc.likelihood.Likelihood1DPowerLightcone method) (py21cmmc.likelihood.Likelihood1DPowerLightconeUpper method) (py21cmmc.likelihood.LikelihoodBase method) (py21cmmc.likelihood.LikelihoodBaseFile method) (py21cmmc.likelihood.LikelihoodEDGES method) (py21cmmc.likelihood.LikelihoodForest method) (py21cmmc.likelihood.LikelihoodGlobalSignal method) (py21cmmc.likelihood.LikelihoodGreig method) (py21cmmc.likelihood.LikelihoodLuminosityFunction method) (py21cmmc.likelihood.LikelihoodNeutralFraction method) (py21cmmc.likelihood.LikelihoodNeutralFractionTwoSided method) (py21cmmc.likelihood.LikelihoodPlanck method) (py21cmmc.likelihood.LikelihoodPlanckPowerSpectra method) A accepted (py21cmmc.cosmoHammer.HDFStorage property) accepted_array (py21cmmc.cosmoHammer.HDFStorage property) addCoreModule() (py21cmmc.cosmoHammer.LikelihoodComputationChain method) addLikelihoodModule() (py21cmmc.cosmoHammer.LikelihoodComputationChain method) B blob_names (py21cmmc.cosmoHammer.HDFStorage property) build_computation_chain() (in module py21cmmc.mcmc) build_model_data() (py21cmmc.core.Core21cmEMU method) (py21cmmc.core.CoreBase method) (py21cmmc.core.CoreCMB method) (py21cmmc.core.CoreCoevalModule method) (py21cmmc.core.CoreForest method) (py21cmmc.core.CoreLightConeModule method) (py21cmmc.core.CoreLuminosityFunction method) (py21cmmc.cosmoHammer.LikelihoodComputationChain method) burnin_initialized (py21cmmc.cosmoHammer.HDFStorageUtil property) C chain (py21cmmc.core.Core21cmEMU property) (py21cmmc.core.CoreBase property) (py21cmmc.core.CoreCMB property) (py21cmmc.core.CoreCoevalModule property) (py21cmmc.core.CoreForest property) (py21cmmc.core.CoreLightConeModule property) (py21cmmc.core.CoreLuminosityFunction property) (py21cmmc.core.ModuleBase property) (py21cmmc.likelihood.Likelihood1DPowerCoeval property) (py21cmmc.likelihood.Likelihood1DPowerLightcone property) (py21cmmc.likelihood.Likelihood1DPowerLightconeUpper property) (py21cmmc.likelihood.LikelihoodBase property) (py21cmmc.likelihood.LikelihoodBaseFile property) (py21cmmc.likelihood.LikelihoodEDGES property) (py21cmmc.likelihood.LikelihoodForest property) (py21cmmc.likelihood.LikelihoodGlobalSignal property) (py21cmmc.likelihood.LikelihoodGreig property) (py21cmmc.likelihood.LikelihoodLuminosityFunction property) (py21cmmc.likelihood.LikelihoodNeutralFraction property) (py21cmmc.likelihood.LikelihoodNeutralFractionTwoSided property) (py21cmmc.likelihood.LikelihoodPlanck property) (py21cmmc.likelihood.LikelihoodPlanckPowerSpectra property) close() (py21cmmc.cosmoHammer.HDFStorageUtil method) cmb_modules (py21cmmc.likelihood.LikelihoodGreig property) (py21cmmc.likelihood.LikelihoodNeutralFraction property) (py21cmmc.likelihood.LikelihoodNeutralFractionTwoSided property) coeval_modules (py21cmmc.likelihood.LikelihoodGreig property) (py21cmmc.likelihood.LikelihoodNeutralFraction property) (py21cmmc.likelihood.LikelihoodNeutralFractionTwoSided property) compute_power() (py21cmmc.likelihood.Likelihood1DPowerCoeval static method) (py21cmmc.likelihood.Likelihood1DPowerLightcone static method) (py21cmmc.likelihood.Likelihood1DPowerLightconeUpper static method) computeLikelihood() (py21cmmc.likelihood.Likelihood1DPowerCoeval method) (py21cmmc.likelihood.Likelihood1DPowerLightcone method) (py21cmmc.likelihood.Likelihood1DPowerLightconeUpper method) (py21cmmc.likelihood.LikelihoodBase method) (py21cmmc.likelihood.LikelihoodBaseFile method) (py21cmmc.likelihood.LikelihoodEDGES method) (py21cmmc.likelihood.LikelihoodForest method) (py21cmmc.likelihood.LikelihoodGlobalSignal method) (py21cmmc.likelihood.LikelihoodGreig method) (py21cmmc.likelihood.LikelihoodLuminosityFunction method) (py21cmmc.likelihood.LikelihoodNeutralFraction method) (py21cmmc.likelihood.LikelihoodNeutralFractionTwoSided method) (py21cmmc.likelihood.LikelihoodPlanck method) (py21cmmc.likelihood.LikelihoodPlanckPowerSpectra method) computeLikelihoods() (py21cmmc.cosmoHammer.LikelihoodComputationChain method) convert_model_to_mock() (py21cmmc.core.Core21cmEMU method) (py21cmmc.core.CoreBase method) (py21cmmc.core.CoreCMB method) (py21cmmc.core.CoreCoevalModule method) (py21cmmc.core.CoreForest method) (py21cmmc.core.CoreLightConeModule method) (py21cmmc.core.CoreLuminosityFunction method) copy() (py21cmmc.cosmoHammer.Params method) Core21cmEMU (class in py21cmmc.core) core_primary (py21cmmc.core.Core21cmEMU property) (py21cmmc.core.CoreBase property) (py21cmmc.core.CoreCMB property) (py21cmmc.core.CoreCoevalModule property) (py21cmmc.core.CoreForest property) (py21cmmc.core.CoreLightConeModule property) (py21cmmc.core.CoreLuminosityFunction property) (py21cmmc.core.ModuleBase property) (py21cmmc.likelihood.Likelihood1DPowerCoeval property) (py21cmmc.likelihood.Likelihood1DPowerLightcone property) (py21cmmc.likelihood.Likelihood1DPowerLightconeUpper property) (py21cmmc.likelihood.LikelihoodBase property) (py21cmmc.likelihood.LikelihoodBaseFile property) (py21cmmc.likelihood.LikelihoodEDGES property) (py21cmmc.likelihood.LikelihoodForest property) (py21cmmc.likelihood.LikelihoodGlobalSignal property) (py21cmmc.likelihood.LikelihoodGreig property) (py21cmmc.likelihood.LikelihoodLuminosityFunction property) (py21cmmc.likelihood.LikelihoodNeutralFraction property) (py21cmmc.likelihood.LikelihoodNeutralFractionTwoSided property) (py21cmmc.likelihood.LikelihoodPlanck property) (py21cmmc.likelihood.LikelihoodPlanckPowerSpectra property) CoreBase (class in py21cmmc.core) CoreCMB (class in py21cmmc.core) CoreCoevalModule (class in py21cmmc.core) CoreForest (class in py21cmmc.core) CoreLightConeModule (class in py21cmmc.core) CoreLuminosityFunction (class in py21cmmc.core) corner_plot() (in module py21cmmc.analyse) CosmoHammerSampler (class in py21cmmc.cosmoHammer) createChainContext() (py21cmmc.cosmoHammer.LikelihoodComputationChain method) createEmceeSampler() (py21cmmc.cosmoHammer.CosmoHammerSampler method) createInitPos() (py21cmmc.cosmoHammer.CosmoHammerSampler method) createInitPositionGenerator() (py21cmmc.cosmoHammer.CosmoHammerSampler method) createSampleFileUtil() (py21cmmc.cosmoHammer.CosmoHammerSampler method) createStopCriteriaStrategy() (py21cmmc.cosmoHammer.CosmoHammerSampler method) D data_spline (py21cmmc.likelihood.Likelihood1DPowerCoeval attribute) (py21cmmc.likelihood.Likelihood1DPowerLightcone attribute) (py21cmmc.likelihood.Likelihood1DPowerLightconeUpper attribute) define_noise() (py21cmmc.likelihood.LikelihoodLuminosityFunction method) E emu_modules (py21cmmc.likelihood.LikelihoodGreig property) (py21cmmc.likelihood.LikelihoodNeutralFraction property) (py21cmmc.likelihood.LikelihoodNeutralFractionTwoSided property) F find_n_rescale() (py21cmmc.core.CoreForest method) freq_edges (py21cmmc.likelihood.LikelihoodEDGES attribute) freq_err_edges (py21cmmc.likelihood.LikelihoodEDGES attribute) from_builtin_data() (py21cmmc.likelihood.Likelihood1DPowerLightcone class method) (py21cmmc.likelihood.Likelihood1DPowerLightconeUpper class method) fwhm_edges (py21cmmc.likelihood.LikelihoodEDGES attribute) fwhm_err_low_edges (py21cmmc.likelihood.LikelihoodEDGES attribute) fwhm_err_upp_edges (py21cmmc.likelihood.LikelihoodEDGES attribute) G get() (py21cmmc.cosmoHammer.Params method) get_blobs() (py21cmmc.cosmoHammer.HDFStorage method) get_chain() (py21cmmc.cosmoHammer.HDFStorage method) get_cl() (py21cmmc.core.CoreCMB method) get_fiducial_model() (py21cmmc.likelihood.Likelihood1DPowerCoeval method) (py21cmmc.likelihood.Likelihood1DPowerLightcone method) (py21cmmc.likelihood.Likelihood1DPowerLightconeUpper method) (py21cmmc.likelihood.LikelihoodBase method) (py21cmmc.likelihood.LikelihoodBaseFile method) (py21cmmc.likelihood.LikelihoodEDGES method) (py21cmmc.likelihood.LikelihoodForest method) (py21cmmc.likelihood.LikelihoodGlobalSignal method) (py21cmmc.likelihood.LikelihoodGreig method) (py21cmmc.likelihood.LikelihoodLuminosityFunction method) (py21cmmc.likelihood.LikelihoodNeutralFraction method) (py21cmmc.likelihood.LikelihoodNeutralFractionTwoSided method) (py21cmmc.likelihood.LikelihoodPlanck method) (py21cmmc.likelihood.LikelihoodPlanckPowerSpectra method) get_last_sample() (py21cmmc.cosmoHammer.HDFStorage method) get_log_prob() (py21cmmc.cosmoHammer.HDFStorage method) get_samples() (in module py21cmmc.analyse) get_trialled_log_prob() (py21cmmc.cosmoHammer.HDFStorage method) get_trials() (py21cmmc.cosmoHammer.HDFStorage method) get_value() (py21cmmc.cosmoHammer.HDFStorage method) getChain() (py21cmmc.cosmoHammer.CosmoHammerSampler method) getCoreModules() (py21cmmc.cosmoHammer.LikelihoodComputationChain method) getLikelihoodModules() (py21cmmc.cosmoHammer.LikelihoodComputationChain method) grow() (py21cmmc.cosmoHammer.HDFStorage method) H has_blobs (py21cmmc.cosmoHammer.HDFStorage property) HDFStorage (class in py21cmmc.cosmoHammer) HDFStorageUtil (class in py21cmmc.cosmoHammer) I initialize_clik_and_class() (py21cmmc.likelihood.LikelihoodPlanckPowerSpectra method) initialized (py21cmmc.cosmoHammer.HDFStorage property) invokeCoreModule() (py21cmmc.cosmoHammer.LikelihoodComputationChain method) invokeCoreModules() (py21cmmc.cosmoHammer.LikelihoodComputationChain method) invokeLikelihoodModule() (py21cmmc.cosmoHammer.LikelihoodComputationChain method) isMaster() (py21cmmc.cosmoHammer.CosmoHammerSampler method) isValid() (py21cmmc.cosmoHammer.LikelihoodComputationChain method) items() (py21cmmc.cosmoHammer.Params method) iteration (py21cmmc.cosmoHammer.HDFStorage property) K keys (py21cmmc.cosmoHammer.Params property) L lightcone_modules (py21cmmc.likelihood.LikelihoodGreig property) (py21cmmc.likelihood.LikelihoodNeutralFraction property) (py21cmmc.likelihood.LikelihoodNeutralFractionTwoSided property) Likelihood1DPowerCoeval (class in py21cmmc.likelihood) Likelihood1DPowerLightcone (class in py21cmmc.likelihood) Likelihood1DPowerLightconeUpper (class in py21cmmc.likelihood) LikelihoodBase (class in py21cmmc.likelihood) LikelihoodBaseFile (class in py21cmmc.likelihood) LikelihoodComputationChain (class in py21cmmc.cosmoHammer) LikelihoodEDGES (class in py21cmmc.likelihood) LikelihoodForest (class in py21cmmc.likelihood) LikelihoodGlobalSignal (class in py21cmmc.likelihood) LikelihoodGreig (class in py21cmmc.likelihood) LikelihoodLuminosityFunction (class in py21cmmc.likelihood) LikelihoodNeutralFraction (class in py21cmmc.likelihood) LikelihoodNeutralFractionTwoSided (class in py21cmmc.likelihood) LikelihoodPlanck (class in py21cmmc.likelihood) LikelihoodPlanckPowerSpectra (class in py21cmmc.likelihood) lnprob() (py21cmmc.likelihood.LikelihoodGreig method) (py21cmmc.likelihood.LikelihoodNeutralFraction method) (py21cmmc.likelihood.LikelihoodNeutralFractionTwoSided method) load_primitive_chain() (in module py21cmmc.analyse) loadBurnin() (py21cmmc.cosmoHammer.CosmoHammerSampler method) loadSamples() (py21cmmc.cosmoHammer.CosmoHammerSampler method) log() (py21cmmc.cosmoHammer.CosmoHammerSampler method) M module py21cmmc.analyse py21cmmc.core py21cmmc.cosmoHammer py21cmmc.likelihood py21cmmc.mcmc ModuleBase (class in py21cmmc.core) N noise_spline (py21cmmc.likelihood.Likelihood1DPowerCoeval attribute) (py21cmmc.likelihood.Likelihood1DPowerLightcone attribute) (py21cmmc.likelihood.Likelihood1DPowerLightconeUpper attribute) O open() (py21cmmc.cosmoHammer.HDFStorage method) P paired_core (py21cmmc.likelihood.Likelihood1DPowerCoeval attribute) (py21cmmc.likelihood.Likelihood1DPowerLightcone attribute) (py21cmmc.likelihood.Likelihood1DPowerLightconeUpper attribute) (py21cmmc.likelihood.LikelihoodForest attribute) (py21cmmc.likelihood.LikelihoodLuminosityFunction attribute) param_guess (py21cmmc.cosmoHammer.HDFStorage property) param_names (py21cmmc.cosmoHammer.HDFStorage property) parameter_names (py21cmmc.core.Core21cmEMU property) (py21cmmc.core.CoreBase property) (py21cmmc.core.CoreCMB property) (py21cmmc.core.CoreCoevalModule property) (py21cmmc.core.CoreForest property) (py21cmmc.core.CoreLightConeModule property) (py21cmmc.core.CoreLuminosityFunction property) (py21cmmc.core.ModuleBase property) (py21cmmc.likelihood.Likelihood1DPowerCoeval property) (py21cmmc.likelihood.Likelihood1DPowerLightcone property) (py21cmmc.likelihood.Likelihood1DPowerLightconeUpper property) (py21cmmc.likelihood.LikelihoodBase property) (py21cmmc.likelihood.LikelihoodBaseFile property) (py21cmmc.likelihood.LikelihoodEDGES property) (py21cmmc.likelihood.LikelihoodForest property) (py21cmmc.likelihood.LikelihoodGlobalSignal property) (py21cmmc.likelihood.LikelihoodGreig property) (py21cmmc.likelihood.LikelihoodLuminosityFunction property) (py21cmmc.likelihood.LikelihoodNeutralFraction property) (py21cmmc.likelihood.LikelihoodNeutralFractionTwoSided property) (py21cmmc.likelihood.LikelihoodPlanck property) (py21cmmc.likelihood.LikelihoodPlanckPowerSpectra property) Params (class in py21cmmc.cosmoHammer) paramValues (py21cmmc.cosmoHammer.CosmoHammerSampler property) paramWidths (py21cmmc.cosmoHammer.CosmoHammerSampler property) persistValues() (py21cmmc.cosmoHammer.HDFStorageUtil method) prepare_storage() (py21cmmc.core.Core21cmEMU method) (py21cmmc.core.CoreBase method) (py21cmmc.core.CoreCMB method) (py21cmmc.core.CoreCoevalModule method) (py21cmmc.core.CoreForest method) (py21cmmc.core.CoreLightConeModule method) (py21cmmc.core.CoreLuminosityFunction method) py21cmmc.analyse module py21cmmc.core module py21cmmc.cosmoHammer module py21cmmc.likelihood module py21cmmc.mcmc module Q qso_redshift (py21cmmc.likelihood.LikelihoodGreig attribute) R random_state (py21cmmc.cosmoHammer.HDFStorage property) redshift (py21cmmc.likelihood.Likelihood1DPowerCoeval property) (py21cmmc.likelihood.Likelihood1DPowerLightcone property) (py21cmmc.likelihood.Likelihood1DPowerLightconeUpper property) redshifts (py21cmmc.likelihood.LikelihoodForest property) (py21cmmc.likelihood.LikelihoodLuminosityFunction property) reduce_data() (py21cmmc.likelihood.Likelihood1DPowerCoeval method) (py21cmmc.likelihood.Likelihood1DPowerLightcone method) (py21cmmc.likelihood.Likelihood1DPowerLightconeUpper method) (py21cmmc.likelihood.LikelihoodBase method) (py21cmmc.likelihood.LikelihoodBaseFile method) (py21cmmc.likelihood.LikelihoodEDGES method) (py21cmmc.likelihood.LikelihoodForest method) (py21cmmc.likelihood.LikelihoodGlobalSignal method) (py21cmmc.likelihood.LikelihoodGreig method) (py21cmmc.likelihood.LikelihoodLuminosityFunction method) (py21cmmc.likelihood.LikelihoodNeutralFraction method) (py21cmmc.likelihood.LikelihoodNeutralFractionTwoSided method) (py21cmmc.likelihood.LikelihoodPlanck method) (py21cmmc.likelihood.LikelihoodPlanckPowerSpectra method) required_cores (py21cmmc.core.Core21cmEMU attribute) (py21cmmc.core.CoreBase attribute) (py21cmmc.core.CoreCMB attribute) (py21cmmc.core.CoreCoevalModule attribute) (py21cmmc.core.CoreForest attribute) (py21cmmc.core.CoreLightConeModule attribute) (py21cmmc.core.CoreLuminosityFunction attribute) (py21cmmc.core.ModuleBase attribute) (py21cmmc.likelihood.Likelihood1DPowerCoeval attribute) (py21cmmc.likelihood.Likelihood1DPowerLightcone attribute) (py21cmmc.likelihood.Likelihood1DPowerLightconeUpper attribute) (py21cmmc.likelihood.LikelihoodBase attribute) (py21cmmc.likelihood.LikelihoodBaseFile attribute) (py21cmmc.likelihood.LikelihoodEDGES attribute) (py21cmmc.likelihood.LikelihoodForest attribute) (py21cmmc.likelihood.LikelihoodGlobalSignal attribute) (py21cmmc.likelihood.LikelihoodGreig attribute) (py21cmmc.likelihood.LikelihoodLuminosityFunction attribute) (py21cmmc.likelihood.LikelihoodNeutralFraction attribute) (py21cmmc.likelihood.LikelihoodNeutralFractionTwoSided attribute) (py21cmmc.likelihood.LikelihoodPlanck attribute) (py21cmmc.likelihood.LikelihoodPlanckPowerSpectra attribute) reset() (py21cmmc.cosmoHammer.HDFStorage method) (py21cmmc.cosmoHammer.HDFStorageUtil method) resetSampler() (py21cmmc.cosmoHammer.CosmoHammerSampler method) run() (py21cmmc.core.CoreLuminosityFunction method) run_mcmc() (in module py21cmmc.mcmc) S sample() (py21cmmc.cosmoHammer.CosmoHammerSampler method) sampleBurnin() (py21cmmc.cosmoHammer.CosmoHammerSampler method) samples (py21cmmc.cosmoHammer.CosmoHammerSampler property) samples_initialized (py21cmmc.cosmoHammer.HDFStorageUtil property) save_step() (py21cmmc.cosmoHammer.HDFStorage method) setup() (py21cmmc.core.Core21cmEMU method) (py21cmmc.core.CoreBase method) (py21cmmc.core.CoreCMB method) (py21cmmc.core.CoreCoevalModule method) (py21cmmc.core.CoreForest method) (py21cmmc.core.CoreLightConeModule method) (py21cmmc.core.CoreLuminosityFunction method) (py21cmmc.core.ModuleBase method) (py21cmmc.cosmoHammer.LikelihoodComputationChain method) (py21cmmc.likelihood.Likelihood1DPowerCoeval method) (py21cmmc.likelihood.Likelihood1DPowerLightcone method) (py21cmmc.likelihood.Likelihood1DPowerLightconeUpper method) (py21cmmc.likelihood.LikelihoodBase method) (py21cmmc.likelihood.LikelihoodBaseFile method) (py21cmmc.likelihood.LikelihoodEDGES method) (py21cmmc.likelihood.LikelihoodForest method) (py21cmmc.likelihood.LikelihoodGlobalSignal method) (py21cmmc.likelihood.LikelihoodGreig method) (py21cmmc.likelihood.LikelihoodLuminosityFunction method) (py21cmmc.likelihood.LikelihoodNeutralFraction method) (py21cmmc.likelihood.LikelihoodNeutralFractionTwoSided method) (py21cmmc.likelihood.LikelihoodPlanck method) (py21cmmc.likelihood.LikelihoodPlanckPowerSpectra method) shape (py21cmmc.cosmoHammer.HDFStorage property) sigma (py21cmmc.core.CoreLuminosityFunction property) simulate_mock() (py21cmmc.core.Core21cmEMU method) (py21cmmc.core.CoreBase method) (py21cmmc.core.CoreCMB method) (py21cmmc.core.CoreCoevalModule method) (py21cmmc.core.CoreForest method) (py21cmmc.core.CoreLightConeModule method) (py21cmmc.core.CoreLuminosityFunction method) (py21cmmc.cosmoHammer.LikelihoodComputationChain method) size (py21cmmc.cosmoHammer.HDFStorage property) startSampleBurnin() (py21cmmc.cosmoHammer.CosmoHammerSampler method) startSampling() (py21cmmc.cosmoHammer.CosmoHammerSampler method) store() (py21cmmc.likelihood.Likelihood1DPowerCoeval method) (py21cmmc.likelihood.Likelihood1DPowerLightcone method) (py21cmmc.likelihood.Likelihood1DPowerLightconeUpper method) T tau_GP() (py21cmmc.core.CoreForest method) threshold (py21cmmc.likelihood.LikelihoodGreig attribute) (py21cmmc.likelihood.LikelihoodNeutralFraction attribute) (py21cmmc.likelihood.LikelihoodNeutralFractionTwoSided attribute) trace_plot() (in module py21cmmc.analyse) V values (py21cmmc.cosmoHammer.Params property)